Showing posts with label X-rays. Show all posts
Showing posts with label X-rays. Show all posts

Thursday, 29 September 2016

Visible light based Imaging for Medical Devices

Algorithm could enable visible-light-based imaging for medical devices, autonomous vehicles – System accounts for the deflection of light particles passing through animal tissue or fog.


Scientia — MIT researchers have developed a technique for recovering visual information from light that has scattered because of interactions with the environment — such as passing through human tissue.


Light, Algorithm , visible-light-based imaging, medical devices, autonomous vehicles, light particles, X-rays, Ultrasound waves, computer vision systems, MIT, Medical Imaging systems

In experiments, the researchers fired a laser beam through a “mask” — a thick sheet of plastic with slits cut through it in a certain configuration, such as the letter A — and then through a 1.5-centimeter “tissue phantom,” a slab of material designed to mimic the optical properties of human tissue for purposes of calibrating imaging systems. Light scattered by the tissue phantom was then collected by a high-speed camera, which could measure the light’s time of arrival.
Image courtesy of the researchers.




The technique could lead to medical-imaging systems that use visible light, which carries much more information than X-rays or ultrasound waves, or to computer vision systems that work in fog or drizzle. The development of such vision systems has been a major obstacle to self-driving cars.


In experiments, the researchers fired a laser beam through a “mask” — a thick sheet of plastic with slits cut through it in a certain configuration, such as the letter A — and then through a 1.5-centimeter “tissue phantom,” a slab of material designed to mimic the optical properties of human tissue for purposes of calibrating imaging systems. Light scattered by the tissue phantom was then collected by a high-speed camera, which could measure the light’s time of arrival.


From that information, the researchers’ algorithms were able to reconstruct an accurate image of the pattern cut into the mask.



An imaging algorithm from the MIT Media Lab’s Camera Culture group compensates for the scattering of light. The advance could potentially be used to develop optical-wavelength medical imaging and autonomous vehicles.

Video: Camera Culture Group



“The reason our eyes are sensitive only in this narrow part of the spectrum is because this is where light and matter interact most,” says Guy Satat, a graduate student at the MIT Media Lab and first author on the new paper. “This is why X-ray is able to go inside the body, because there is very little interaction. That’s why it can’t distinguish between different types of tissue, or see bleeding, or see oxygenated or deoxygenated blood.”


The imaging technique’s potential applications in automotive sensing may be even more compelling than those in medical imaging, however. Many experimental algorithms for guiding autonomous vehicles are highly reliable under good illumination, but they fall apart completely in fog or drizzle; computer vision systems misinterpret the scattered light as having reflected off of objects that don’t exist. The new technique could address that problem.

Satat’s coauthors on the new paper, published today in Scientific Reports, are three other members of the Media Lab’s Camera Culture group: Ramesh Raskar, the group’s leader, Satat’s thesis advisor, and an associate professor of media arts and sciences; Barmak Heshmat, a research scientist; and Dan Raviv, a postdoc.


Light, Algorithm , visible-light-based imaging, medical devices, autonomous vehicles, light particles, X-rays, Ultrasound waves, computer vision systems, MIT, Medical Imaging systems

An illustration shows the researchers’ experimental setup. The data captured by the camera can be thought of as a movie — a two-dimensional image that changes over time.
Illustration courtesy of the researchers.




Expanding circles

Like many of the Camera Culture group’s projects, the new system relies on a pulsed laser that emits ultrashort bursts of light, and a high-speed camera that can distinguish the arrival times of different groups of photons, or light particles. When a light burst reaches a scattering medium, such as a tissue phantom, some photons pass through unmolested; some are only slightly deflected from a straight path; and some bounce around inside the medium for a comparatively long time. The first photons to arrive at the sensor have thus undergone the least scattering; the last to arrive have undergone the most.


Where previous techniques have attempted to reconstruct images using only those first, unscattered photons, the MIT researchers’ technique uses the entire optical signal. Hence its name: all-photons imaging.


The data captured by the camera can be thought of as a movie — a two-dimensional image that changes over time. To get a sense of how all-photons imaging works, suppose that light arrives at the camera from only one point in the visual field. The first photons to reach the camera pass through the scattering medium unimpeded: They show up as just a single illuminated pixel in the first frame of the movie.


The next photons to arrive have undergone slightly more scattering, so in the second frame of the video, they show up as a small circle centered on the single pixel from the first frame. With each successive frame, the circle expands in diameter, until the final frame just shows a general, hazy light.


The problem, of course, is that in practice the camera is registering light from many points in the visual field, whose expanding circles overlap. The job of the researchers’ algorithm is to sort out which photons illuminating which pixels of the image originated where.


Cascading probabilities

The first step is to determine how the overall intensity of the image changes in time. This provides an estimate of how much scattering the light has undergone: If the intensity spikes quickly and tails off quickly, the light hasn’t been scattered much. If the intensity increases slowly and tails off slowly, it has.


On the basis of that estimate, the algorithm considers each pixel of each successive frame and calculates the probability that it corresponds to any given point in the visual field. Then it goes back to the first frame of video and, using the probabilistic model it has just constructed, predicts what the next frame of video will look like. With each successive frame, it compares its prediction to the actual camera measurement and adjusts its model accordingly. Finally, using the final version of the model, it deduces the pattern of light most likely to have produced the sequence of measurements the camera made.


One limitation of the current version of the system is that the light emitter and the camera are on opposite sides of the scattering medium. That limits its applicability for medical imaging, although Satat believes that it should be possible to use fluorescent particles known as fluorophores, which can be injected into the bloodstream and are already used in medical imaging, as a light source. And fog scatters light much less than human tissue does, so reflected light from laser pulses fired into the environment could be good enough for automotive sensing.


“People have been using what is known as time gating, the idea that photons not only have intensity but also time-of-arrival information and that if you gate for a particular time of arrival you get photons with certain specific path lengths and therefore [come] from a certain specific depth in the object,” says Ashok Veeraraghavan, an assistant professor of electrical and computer engineering at Rice University. “This paper is taking that concept one level further and saying that even the photons that arrive at slightly different times contribute some spatial information.”


“Looking through scattering media is a problem that’s of large consequence,” he adds. But he cautions that the new paper does not entirely solve it. “There’s maybe one barrier that’s been crossed, but there are maybe three more barriers that need to be crossed before this becomes practical,” he says.




– Credit and Resource –


Larry Hardesty | MIT News Office




Visible light based Imaging for Medical Devices

Tuesday, 27 October 2015

Huge Flare from Black Hole

Scientia — The baffling and strange behaviors of black holes have become somewhat less mysterious recently, with new observations from NASA’s Explorer missions Swift and the Nuclear Spectroscopic Telescope Array, or NuSTAR. The two space telescopes caught a supermassive black hole in the midst of a giant eruption of X-ray light, helping astronomers address an ongoing puzzle: How do supermassive black holes flare?


X-rays, corona , NuSTAR, Black hole, galaxy, Supermassive black holes, NASA, Nuclear Spectroscopic Telescope Array

This diagram shows how a shifting feature, called a corona, can create a flare of X-rays around a black hole. Credit: NASA/JPL-Caltech


The results suggest that supermassive black holes send out beams of X-rays when their surrounding coronas—sources of extremely energetic particles—shoot, or launch, away from the black holes.


“This is the first time we have been able to link the launching of the corona to a flare,” said Dan Wilkins of Saint Mary’s University in Halifax, Canada, lead author of a new paper on the results appearing in the Monthly Notices of the Royal Astronomical Society. “This will help us understand how supermassive black holes power some of the brightest objects in the universe.”






Supermassive black holes don’t give off any light themselves, but they are often encircled by disks of hot, glowing material. The gravity of a black hole pulls swirling gas into it, heating this material and causing it to shine with different types of light. Another source of radiation near a black hole is the corona. Coronas are made up of highly energetic particles that generate X-ray light, but details about their appearance, and how they form, are unclear.


Astronomers think coronas have one of two likely configurations. The “lamppost” model says they are compact sources of light, similar to light bulbs, that sit above and below the black hole, along its rotation axis. The other model proposes that the coronas are spread out more diffusely, either as a larger cloud around the black hole, or as a “sandwich” that envelops the surrounding disk of material like slices of bread. In fact, it’s possible that coronas switch between both the lamppost and sandwich configurations.


The new data support the “lamppost” model—and demonstrate, in the finest detail yet, how the light-bulb-like coronas move. The observations began when Swift, which monitors the sky for cosmic outbursts of X-rays and gamma rays, caught a large flare coming from the supermassive black hole called Markarian 335, or Mrk 335, located 324 million light-years away in the direction of the constellation Pegasus. This supermassive black hole, which sits at the center of a galaxy, was once one of the brightest X-ray sources in the sky.


“Something very strange happened in 2007, when Mrk 335 faded by a factor of 30. What we have found is that it continues to erupt in flares but has not reached the brightness levels and stability seen before,” said Luigi Gallo, the principal investigator for the project at Saint Mary’s University. Another co-author, Dirk Grupe of Morehead State University in Kentucky, has been using Swift to regularly monitor the black hole since 2007.


In September 2014, Swift caught Mrk 335 in a huge flare. Once Gallo found out, he sent a request to the NuSTAR team to quickly follow up on the object as part of a “target of opportunity” program, where the observatory’s previously planned observing schedule is interrupted for important events. Eight days later, NuSTAR set its X-ray eyes on the target, witnessing the final half of the flare event.




After careful scrutiny of the data, the astronomers realized they were seeing the ejection, and eventual collapse, of the black hole’s corona.


“The corona gathered inward at first and then launched upwards like a jet,” said Wilkins. “We still don’t know how jets in black holes form, but it’s an exciting possibility that this black hole’s corona was beginning to form the base of a jet before it collapsed.”


How could the researchers tell the corona moved? The corona gives off X-ray light that has a slightly different spectrum—X-ray “colors”—than the light coming from the disk around the black hole. By analyzing a spectrum of X-ray light from Mrk 335 across a range of wavelengths observed by both Swift and NuSTAR, the researchers could tell that the corona X-ray light had brightened—and that this brightening was due to the motion of the corona.


Coronas can move very fast. The corona associated with Mrk 335, according to the scientists, was traveling at about 20 percent the speed of light. When this happens, and the corona launches in our direction, its light is brightened in an effect called relativistic Doppler boosting.


Putting this all together, the results show that the X-ray flare from this black hole was caused by the ejected corona.


“The nature of the energetic source of X-rays we call the corona is mysterious, but now with the ability to see dramatic changes like this we are getting clues about its size and structure,” said Fiona Harrison, the principal investigator of NuSTAR at the California Institute of Technology in Pasadena, who was not affiliated with the study.


Many other black hole brainteasers remain. For example, astronomers want to understand what causes the ejection of the corona in the first place.




– Credit and Resource –


Journal reference: Monthly Notices of the Royal Astronomical Society




Huge Flare from Black Hole